Study

Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution

Processed data and frozen outputs supporting the manuscript “Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution.” The archive includes source data for four main figures, 41 supplementary data tables, a dated species tree, protein alignments, gene-family trees, a reproducibility guide, and SHA-256 checksums.

Authors

Si Li1Yanyan Huang2

  1. 1Hebei University of Technology
  2. 2School of Chemical Engineering and Technology, Hebei University of Technology

Abstract

Processed data and frozen outputs supporting the manuscript “Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution.” The archive includes source data for four main figures, 41 supplementary data tables, a dated species tree, protein alignments, gene-family trees, a reproducibility guide, and SHA-256 checksums. Analysis code is available at https://github.com/jackeikee-debug/nature-bird-lifespan, release v1.0.0.

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Scientific commitbf6ac86b961d
Result tables50
CoverageComplete
LicenseCreative Commons Attribution 4.0 International

Source inventory

Deterministically extracted immutable study materials.

Repositories1
Result tables50
Charts37
Released figures18
Source datasets50
Complete tables50

Extracted study record

Authoritative metadata and released result artifacts.

The preserved source contains 50 result tables; 50 have complete deterministic representation coverage.

Supplementary Data 41 Sequence Validation Model Impact

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Supplementary Data 41 Sequence Validation Model Impact

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−1.0−0.50.0+0.5+1.0baseline0.007530047614829baseline: +0.283+0.283rescued0.0075295685457648rescued: +0.287+0.287Estimate
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submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_41_sequence_validation_model_impact.tsv
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Figure 1 Design Counts

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_1_design_counts.tsv, rendered as a deterministic bar chart.

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Figure 1 Design Counts

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_1_design_counts.tsv, rendered as a deterministic bar chart.

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Figure 2 Module Ranking

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_2_module_ranking.tsv, rendered as a deterministic bar chart.

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Figure 2 Module Ranking

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_2_module_ranking.tsv, rendered as a deterministic bar chart.

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Figure 3 Evidence By Gene

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_3_evidence_by_gene.tsv, rendered as a deterministic bar chart.

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Figure 3 Evidence By Gene

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_3_evidence_by_gene.tsv, rendered as a deterministic bar chart.

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Figure 3 Evidence Waterfall

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_3_evidence_waterfall.tsv, rendered as a deterministic bar chart.

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Figure 3 Evidence Waterfall

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_3_evidence_waterfall.tsv, rendered as a deterministic bar chart.

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Figure 4 Samhd1 Leave One Species

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_4_samhd1_leave_one_species.tsv, rendered as a deterministic bar chart.

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Figure 4 Samhd1 Leave One Species

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_4_samhd1_leave_one_species.tsv, rendered as a deterministic bar chart.

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submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Source_Data/Figure_4_samhd1_leave_one_species.tsv
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Deterministic extraction method

No generative model selected, summarized, or transformed the results.

Evidence classified preserved repository files, parsed bounded structured tables, inferred column types, and selected registered components using versioned rules.

Data and provenance

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Pinned repositorybf6ac86b961d575f3524b994dcce9fff993637beOpenPublication record10.5281/zenodo.20798437Open

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Pinned scientific commit: bf6ac86b961d575f3524b994dcce9fff993637be

Limitations

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Every accepted released table cell is represented by registered Evidence components; unstructured claims are not converted into numerical results.

Citation

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Scholarly publication

Si Li, Yanyan Huang. Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution. 10.5281/zenodo.20798437.

Open publication

Pinned analysis source

https://github.com/jackeikee-debug/nature-bird-lifespan, commit bf6ac86b961d575f3524b994dcce9fff993637be.

Open pinned source