Study

Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution

Processed data and frozen outputs supporting the manuscript “Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution.” The archive includes source data for four main figures, 41 supplementary data tables, a dated species tree, protein alignments, gene-family trees, a reproducibility guide, and SHA-256 checksums.

Authors

Si Li1Yanyan Huang2

  1. 1Hebei University of Technology
  2. 2School of Chemical Engineering and Technology, Hebei University of Technology

Abstract

Processed data and frozen outputs supporting the manuscript “Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution.” The archive includes source data for four main figures, 41 supplementary data tables, a dated species tree, protein alignments, gene-family trees, a reproducibility guide, and SHA-256 checksums. Analysis code is available at https://github.com/jackeikee-debug/nature-bird-lifespan, release v1.0.0.

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This page presents preserved, source-backed released materials.
Evidence does not infer results absent from the immutable sources.
Scientific commitbf6ac86b961d
Result tables50
CoverageComplete
LicenseCreative Commons Attribution 4.0 International

Source inventory

Deterministically extracted immutable study materials.

Repositories1
Result tables50
Charts37
Released figures18
Source datasets50
Complete tables50

Extracted study record

Authoritative metadata and released result artifacts.

The preserved source contains 50 result tables; 50 have complete deterministic representation coverage.

Supplementary Data 24 Targeted Domain Conservation Intervals

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_24_targeted_domain_conservation_intervals.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 24 Targeted Domain Conservation Intervals

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_24_targeted_domain_conservation_intervals.tsv, rendered as a deterministic bar chart.

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submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_24_targeted_domain_conservation_intervals.tsv
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released
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e7d0dcfb…b66f77

Supplementary Data 25 Targeted Domain Conservation Pgls

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_25_targeted_domain_conservation_pgls.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 25 Targeted Domain Conservation Pgls

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_25_targeted_domain_conservation_pgls.tsv, rendered as a deterministic bar chart.

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Showing 20 of 52 chart rows
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submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_25_targeted_domain_conservation_pgls.tsv
Version
released
Integrity
a72c5f3c…153610

Supplementary Data 26 Samhd1 Domain Robustness

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_26_samhd1_domain_robustness.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 26 Samhd1 Domain Robustness

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_26_samhd1_domain_robustness.tsv, rendered as a deterministic bar chart.

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Showing 20 of 36 chart rows
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submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_26_samhd1_domain_robustness.tsv
Version
released
Integrity
ce858ce6…bc3bf7

Supplementary Data 27 Samhd1 Leave One Species Out

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_27_samhd1_leave_one_species_out.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 27 Samhd1 Leave One Species Out

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_27_samhd1_leave_one_species_out.tsv, rendered as a deterministic bar chart.

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Showing 20 of 106 chart rows
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File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_27_samhd1_leave_one_species_out.tsv
Version
released
Integrity
3c0c7096…db58ba

Supplementary Data 28 Curated Ortholog Rule Eligibility

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_28_curated_ortholog_rule_eligibility.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 28 Curated Ortholog Rule Eligibility

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_28_curated_ortholog_rule_eligibility.tsv, rendered as a deterministic bar chart.

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submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_28_curated_ortholog_rule_eligibility.tsv
Version
released
Integrity
c29d7ad6…90c15a

Supplementary Data 29 Curated Ortholog Rule Clade Summary

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_29_curated_ortholog_rule_clade_summary.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 29 Curated Ortholog Rule Clade Summary

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_29_curated_ortholog_rule_clade_summary.tsv, rendered as a deterministic bar chart.

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Showing 16 of 16 chart rows
Chart marks are derived only from the immutable released table; the complete source data follows.
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File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_29_curated_ortholog_rule_clade_summary.tsv
Version
released
Integrity
79cd45ac…bb1da0

Deterministic extraction method

No generative model selected, summarized, or transformed the results.

Evidence classified preserved repository files, parsed bounded structured tables, inferred column types, and selected registered components using versioned rules.

Data and provenance

Immutable publication and repository sources.

Pinned repositorybf6ac86b961d575f3524b994dcce9fff993637beOpenPublication record10.5281/zenodo.20798437Open

Reuse boundary

Only released and preserved source rows are displayed.

No model is rerun and no missing value is inferred.

Pinned scientific commit: bf6ac86b961d575f3524b994dcce9fff993637be

Limitations

Deterministic coverage boundaries.

Every accepted released table cell is represented by registered Evidence components; unstructured claims are not converted into numerical results.

Citation

Cite the scholarly record and pinned analysis source.

Scholarly publication

Si Li, Yanyan Huang. Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution. 10.5281/zenodo.20798437.

Open publication

Pinned analysis source

https://github.com/jackeikee-debug/nature-bird-lifespan, commit bf6ac86b961d575f3524b994dcce9fff993637be.

Open pinned source