Study

Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution

Processed data and frozen outputs supporting the manuscript “Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution.” The archive includes source data for four main figures, 41 supplementary data tables, a dated species tree, protein alignments, gene-family trees, a reproducibility guide, and SHA-256 checksums.

Authors

Si Li1Yanyan Huang2

  1. 1Hebei University of Technology
  2. 2School of Chemical Engineering and Technology, Hebei University of Technology

Abstract

Processed data and frozen outputs supporting the manuscript “Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution.” The archive includes source data for four main figures, 41 supplementary data tables, a dated species tree, protein alignments, gene-family trees, a reproducibility guide, and SHA-256 checksums. Analysis code is available at https://github.com/jackeikee-debug/nature-bird-lifespan, release v1.0.0.

Read the publicationView the repository

This page presents preserved, source-backed released materials.
Evidence does not infer results absent from the immutable sources.
Scientific commitbf6ac86b961d
Result tables50
CoverageComplete
LicenseCreative Commons Attribution 4.0 International

Source inventory

Deterministically extracted immutable study materials.

Repositories1
Result tables50
Charts37
Released figures18
Source datasets50
Complete tables50

Extracted study record

Authoritative metadata and released result artifacts.

The preserved source contains 50 result tables; 50 have complete deterministic representation coverage.

Supplementary Data 3 Sequence Evidence Ladder

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_3_sequence_evidence_ladder.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 3 Sequence Evidence Ladder

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_3_sequence_evidence_ladder.tsv, rendered as a deterministic bar chart.

Explore published values

These controls change only this view. Published source values stay unchanged.

Showing 20 of 140 chart rows
Chart marks are derived only from the immutable released table; the complete source data follows.
SHA-256 verified
Source & verification
File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_3_sequence_evidence_ladder.tsv
Version
released
Integrity
4d26c221…fc7444

Supplementary Data 30 Curated Ortholog Sensitivity Pgls

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_30_curated_ortholog_sensitivity_pgls.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 30 Curated Ortholog Sensitivity Pgls

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_30_curated_ortholog_sensitivity_pgls.tsv, rendered as a deterministic bar chart.

Explore published values

These controls change only this view. Published source values stay unchanged.

Showing 20 of 208 chart rows
Chart marks are derived only from the immutable released table; the complete source data follows.
SHA-256 verified
Source & verification
File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_30_curated_ortholog_sensitivity_pgls.tsv
Version
released
Integrity
78b9db58…99ddec

Supplementary Data 31 Curated Ortholog Module Scores

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_31_curated_ortholog_module_scores.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 31 Curated Ortholog Module Scores

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_31_curated_ortholog_module_scores.tsv, rendered as a deterministic bar chart.

Explore published values

These controls change only this view. Published source values stay unchanged.

Showing 20 of 1,000 chart rows
Chart marks are derived only from the immutable released table; the complete source data follows.
SHA-256 verified
Source & verification
File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_31_curated_ortholog_module_scores.tsv
Version
released
Integrity
eed7792a…39a76d

Supplementary Data 33 Gene Matrix Summary

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_33_gene_matrix_summary.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 33 Gene Matrix Summary

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_33_gene_matrix_summary.tsv, rendered as a deterministic bar chart.

Explore published values

These controls change only this view. Published source values stay unchanged.

Showing 6 of 6 chart rows
Chart marks are derived only from the immutable released table; the complete source data follows.
SHA-256 verified
Source & verification
File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_33_gene_matrix_summary.tsv
Version
released
Integrity
f9b8b3d0…be5ad3

Supplementary Data 34 Audited Gene Selection

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_34_audited_gene_selection.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 34 Audited Gene Selection

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_34_audited_gene_selection.tsv, rendered as a deterministic bar chart.

Explore published values

These controls change only this view. Published source values stay unchanged.

Showing 10 of 10 chart rows
Chart marks are derived only from the immutable released table; the complete source data follows.
SHA-256 verified
Source & verification
File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_34_audited_gene_selection.tsv
Version
released
Integrity
db16e52f…507caf

Supplementary Data 35 Matched Random Gene Set Null

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_35_matched_random_gene_set_null.tsv, rendered as a deterministic bar chart.

Evidence visualization

Supplementary Data 35 Matched Random Gene Set Null

Released values from submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_35_matched_random_gene_set_null.tsv, rendered as a deterministic bar chart.

Explore published values

These controls change only this view. Published source values stay unchanged.

Showing 20 of 1,000 chart rows
Chart marks are derived only from the immutable released table; the complete source data follows.
SHA-256 verified
Source & verification
File
submission:submission-0874a5a043ddb0a424e0af00:1/nature-bird-lifespan-data-v1.0.0.zip!/Supplementary_Data/Supplementary_Data_35_matched_random_gene_set_null.tsv
Version
released
Integrity
63604cc0…9118cd

Deterministic extraction method

No generative model selected, summarized, or transformed the results.

Evidence classified preserved repository files, parsed bounded structured tables, inferred column types, and selected registered components using versioned rules.

Data and provenance

Immutable publication and repository sources.

Pinned repositorybf6ac86b961d575f3524b994dcce9fff993637beOpenPublication record10.5281/zenodo.20798437Open

Reuse boundary

Only released and preserved source rows are displayed.

No model is rerun and no missing value is inferred.

Pinned scientific commit: bf6ac86b961d575f3524b994dcce9fff993637be

Limitations

Deterministic coverage boundaries.

Every accepted released table cell is represented by registered Evidence components; unstructured claims are not converted into numerical results.

Citation

Cite the scholarly record and pinned analysis source.

Scholarly publication

Si Li, Yanyan Huang. Sequence-audited comparative genomics of genome-maintenance genes in vertebrate lifespan evolution. 10.5281/zenodo.20798437.

Open publication

Pinned analysis source

https://github.com/jackeikee-debug/nature-bird-lifespan, commit bf6ac86b961d575f3524b994dcce9fff993637be.

Open pinned source